Publications

Acknowledgements

StemCore Laboratories undergoes annual evaluation based in part upon its ability to provide access to research enabling technology platforms that are critical to the success of our scientific community. One tangible demonstration of StemCore's utility is the generation of data that is subsequently utilized in peer-reviewed publication. Although not a requirement for the use of our facilities, a statement to acknowledge the contribution of individual StemCore platforms in the accepted publication would be greatly appreciated. We would also be very pleased to receive notification when manuscripts which acknowledge the contribution of StemCore are accepted for publication. Thank you.

 

 

Selected Publications by StemCore Members or Users of StemCore Laboratories

 

2011

  • Dankar SK, W. S., Ping J, Forbes NE, Keleta L, Li Y, Brown EG (2011). "Influenza A virus NS1 gene mutations F103L and M106I increase replication and virulence." Virol J 8(1).

 

2010

  • Julianna J. Tomlinson, A. B., Dongmei Wu, Houssein Abdou Salem, Amanda Carrigan, Annemarie Gagnon, Alan J. Mears, Alexander Sorisky, Ella Atlas and Robert J. G. Haché (2010). "Insulin Sensitization of Human Preadipocytes through Glucocorticoid Hormone Induction of Forkhead Transcription Factors." Molecular Endocrinology 24(1): 104-113.
  • Patricia Benveniste, C. F., Salima Janmohamed, Mary Barbara, Robert Herrington, Deborah Hyam, Norman N. Iscove (2010). "Intermediate-Term Hematopoietic Stem Cells with Extended but Time-Limited Reconstitution Potential." Cell Stem Cell 6(1): 48-58.
  • Schnerch A, C. C., Bhatia M. (2010). "Distinguishing Between Mouse and Human Pluripotent Stem Cell Regulation: The Best Laid Plans of Mice and Men." Stem Cells and Development.
  • Scimè A, D. J., Trensz F, Palidwor GA, Caron AZ, Andrade-Navarro MA, Grenier G. (2010). "Transcriptional profiling of skeletal muscle reveals factors that are necessary to maintain satellite cell integrity during ageing." Mech Ageing Dev. 131(1): 9-20.
  • Hayashi M, N. T., Kodama T, Makrigiannis AP, Toyama-Sorimachi N, and Takayanagi H (2010). "Ly49Q, an ITIM-bearing NK receptor, positively regulates osteoclast differentiation." Biochem. Biophys. Res. Comm 393.    
  • Jihui Ping, S. K. D., Nicole E. Forbes, Liya Keleta, Yan Zhou, Shaun Tyler, and Earl G. Brown (2010). "PB2 and HA Mutations are Major Determinants of Host Range and Virulence in Mouse-Adapted Influenza A Virus." Journal of Virology 84(20).    
  • Li L, W. B., Wang S, Moalim-Nour L, Mohib K, Lohnes D, Wang L. (2010 ). "Individual cell movement, asymmetric colony expansion, rho-associated kinase, and E-cadherin impact the clonogenicity of human embryonic stem cells." Biophys J. 98(11).    
  • Li L, W. S., Jezierski A, Moalim-Nour L, Mohib K, Parks RJ, Retta SF, Wang L. (2010). "A unique interplay between Rap1 and E-cadherin in the endocytic pathway regulates self-renewal of human embryonic stem cells." Stem Cells 28(2).    
  • P. Miura1, A. C., G. Bélanger1, Y. De Repentigny3, J. Lee2, R. Kothary1,3, M. Holcik2,4 and B.J. Jasmin1,3, (2010). "The utrophin A 50-UTR drives cap-independent translation exclusively in skeletal muscles of transgenic mice and interacts with eEF1A2." Human Molecular Genetics 19(7).    
  • Patel R, B. S., Tai L-H, Troke AD, and Makrigiannis AP. (2010). "Effect of Ly49 haplotype variance on natural killer cell function and education." J. Immunol. 185.    
  • Sasawatari S, Y. M., Taya C, Tazawa A, Furuyama-Tanaka K, Yonekawa H, Dohi T, Makrigiannis AP, Sasazuki T, Inaba K, and Toyama-Sorimachi N (2010). "The Ly49Q receptor plays a crucial role in neutrophil polarization and migration by regulating raft trafficking." Immunity 32.    
  • Xie X, S. M., Coats ER, Ahmed Rahim MM, Lundgren A, Xu W, Makrigiannis AP, and Brown MG (2010). "MHC class I Dk expression in hematopoietic and nonhematopoietic cells confers natural killer cell resistance to murine cytomegalovirus." PNAS 107.

 

2009

  • Werbowetski-Ogilvie TE, B. M., Stewart M, Schnerch A, Ramos-Mejia V, Rouleau A, Wynder T, Smith MJ, Dingwall S, Carter T, Williams C, Harris C, Dolling J, Wynder C, Boreham D, Bhatia M. (2009). "Characterization of human embryonic stem cells with features of neoplastic progression." Nat Biotechnol 27(1): 91-97.   
  • Muro EM, M. J., Rudnicki MA, Andrade-Navarro MA. (2009). "Use of SNP-arrays for ChIP assays: computational aspects." Methods Mol Biol.(567): 145-154.
  • David R.C. Natalea, M. H., Martha Hughesa and James C. Crossa (2009). "Activin promotes differentiation of cultured mouse trophoblast stem cells towards a labyrinth cell fate." Developmental Biology 335(1): 120-131.
  • Pratt, M. A., Tibbo, E., Robertson, S. J., Jansson, D., Hurst, K., Perez-Iratxeta, C., Lau, R., Niu, M. Y. 2009. "The canonical NF-kappaB pathway is required for formation of luminal mammary neoplasias and is activated in the mammary progenitor population." Oncogene 28(30): 2710-2008. 
  • Le Grand, F., Jones, A.E., Seale, V., Scime, A., and Rudnicki, M.A. 2009. "Wnt7a activates the planar cell polarity pathway to drive the symmetric expansion of satellite stem cells." Cell Stem Cell 4: 535-547.
  • Savage, J., Conley, A.J., Blais, A., and Skerjanc, I.S. 2009. "SOX15 and SOX7 differentially regulate the myogenic program in P19 cells." Stem Cells 27(6): 1231-1234.
  • Sandie, R., Palidwor, G., Huska, M.R., Porter, C.J., Krzyzanowski, P.M., Muro, E.M., Perez-Iratxeta, C., and Andrade-Navarro, M.A. 2009. "Recent developments in StemBase: a tool to study gene expression in human and murine stem cells." BMC Research Notes 2(39).
  • Haddon, D.J., Hughes, M.R., Antignano, F., Westaway, D., Cashman, N.R., and McNagny, K.M. 2009. "Prion Protein Expression and Release by Mast Cells After Activation." The Journal of Infectious Diseases 200(5): 827-831.

 

2008

  • Wang, S., Liu, Q., Pu, J., Li, Y., Keleta, L., Y.W., H., Liu, J., and Brown, E.G. 2008. "Simplified recombinational approach for influenza A virus reverse genetics." Journal of Virological Methods 151(1): 74-78.
  • Baldwin, R.M., Parolin, D.A.E., and Lorimer, I.A.J. 2008. "Regulation of glioblastoma cell invasion by PKCι and RhoB." Oncogene 27: 3587-3595.
  • Nicolas Pineault, J.-F. B., Marie-Pierre Cayer, Lars Palmqvist, Lucie Boyer, Réal Lemieux, Chantal Proulx. (2008). "Characterization of the Effects and Potential Mechanisms Leading to Increased Megakaryocytic Differentiation Under Mild Hyperthermia." Stem Cells and Development 17(3).
  • Iain W. McKinnell, J. I., 1* Fabien Le Grand,1 Vincent J. G. Punch,1 Gregory C. Addicks,1 Jack F. Greenblatt,2 F. Jeffrey Dilworth,1 and Michael A. Rudnicki1,3 (2008). "Pax7 activates myogenic genes by recruitment of a histone methyltransferase complex." Nat Cell Biol 10(1): 77-84.
  • A. Raouf, Y. Z., K. To, J. Stingl, A. Delaney, M. Barbara, N. Iscove, S. Jones, S. McKinney, J. Emerman (2008). "Transcriptome Analysis of the Normal Human Mammary Cell Commitment and Differentiation Process." Cell Stem Cell 3(1): 109-118.
  • Archer SL, G.-M. M., Maitland ML, Rich S, Garcia JG, Weir EK. (2008). "Mitochondrial metabolism, redox signaling, and fusion: a mitochondria-ROS-HIF-1alpha-Kv1.5 O2-sensing pathway at the intersection of pulmonary hypertension and cancer." Am J Physiol Heart Circ Physiol 294(2): H570-H578.   
  • Bakkar N, W. J., Ladner KJ, Wang H, Dahlman JM, Carathers M, Acharyya S, Rudnicki MA, Hollenbach AD, Guttridge DC. (2008). "IKK/NF-kappaB regulates skeletal myogenesis via a signaling switch to inhibit differentiation and promote mitochondrial biogenesis." J Cell Biol 180(4): 787-802.
  • Lee, R.E., Puente, L.G., Kaern, M., and Megeney, L.A. 2008. "A non-death role of the yeast metacaspase: Yca1p alters cell cycle dynamics." PLoS One 3(8): e2956.

  • Goulet, I., Boisvenue, S., Mokas, S., Mazroui, R., and Cote, J. 2008. "TDRD3, a novel Tudor domain-containing protein, localizes to cytoplasmic stress granules." Human Molecular Genetics 17(19): 3055-3074.

  • Calixte, S. and Bonen, L. 2008. "Developmentally-specific transcripts from the ccmFN-rps1 locus in wheat mitochondria." Molecular Genetics and Genomics 280(5): 419-426.

 

2007

  • McCann,J.A., Muro,E.M., Palmer, C.,Palidwor,G., Porter,C.J., Andrade,M.A., Rudnicki,M.A. "ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation." BMC Genomics 2007,8:322doi:10.1186/1471-2164-8-32. Published 14 September 2007 (PDF)
  • Campbell, P. A., Perez-Iratxeta, C., Andrade-Navarro, M. A. & Rudnicki, M. A. "Oct4 targets regulatory nodes to modulate stem cell function. PLoS ONE 2." e553 (2007).

  • Porter, C.J., Palidwor, G., Sandie, R., Krzyzanowski, P.M., Muro, E.M., Perez-Iratxeta, C., and Andrade-Navarro, M.A. 2007. "StemBase: a resource for the analysis of stem cell gene expression data." Methods in Molecular Biology 407: 137-148.

  • zur Nieden, N.I., Price, F.D., Davis, L.A., Everitt, R.E., and Rancourt, D.E. 2007. "Gene profiling on mixed ES cell populations reveals a biphasic role for b-catenin in osteogenic differentiation." Molecular Endocrinology 21: 674-685.

  • Smith, J.M., Stubbert, L.J., Hamill, J.D., and McKay, B.C. 2007. "The contribution of transactivation subdomains 1 and 2 to p53-induced gene expression is heterogenous but not subdomain specific." Neoplasia 9(12): 1057-1065.

  • Power, A.T., Wang, J., Falls, T.J., Paterson, J.M., Parato, K.A., Lichty, B.D., Stojdl, D.F., Forsyth, P.A., Atkins, H., and Bell, J.C. 2007. "Carrier cell-based delivery of an oncolytic virus circumvents antiviral immunity." Mol Ther 15(1): 123-130.

  • Kuang, S., Kuroda, K., Le Grand, F., and Rudnicki, M.A. 2007. "Asymmetric self-renewal and commitment of satellite stem cells in muscle." Cell 129(5): 999-1010.

  • Holterman, C.E., Le Grand, F., Kuang, S., Seale, P., and Rudnicki, M.A. 2007. "Megf10 regulates the progression of the satellite cell myogenic program." J Cell Biol 179(5): 911-922.

  • Hailesellasse, S.K., Porter, C.J., Palidwor, G., Perez-Iratxeta, C., Muro, E.M., Campbell, P.A., Rudnicki, M.A., and Andrade-Navarro, M.A. 2007. "Gene function in early mouse embryonic stem cell differentiation." BMC Genomics 29(8): 85.

  • Guillaume, G., Anthony, S., Fabien Le, G., Atsushi, A., Carolina, P.-I., Miguel, A.A.-N., Patricia, A.L., and Michael, A.R. 2007. "Resident Endothelial Precursors in Muscle, Adipose, and Dermis Contribute to Postnatal Vasculogenesis." Stem Cells 25(12): 3101-3110.

  • Goulet, I., Gauvin, G., Boisvenue, S., and Cote, J. 2007. "Alternative splicing yields protein arginine methyltransferase 1 isoforms with distinct activity, substrate specificity, and subcellular localization." Journal of Bioligical Chemistry 282(45): 33009-33021.

 

2006

  • Puente LG, Voisin S, Lee RE, Megeney LA. "Reconstructing the regulatory kinase pathways of myogenesis from phosphopeptide data." Mol Cell Proteomics. 2006 Sep 13 [ Pubmed] 
  • Puente LG, Borris DJ, CarriereJF, Kelly JF, Megeney LA. "Identification of canidate regulators of embryonic stem cell differentiation by comparative phosphoprotein affinity profiling." Mol Cell Proteomics. 2006 Jan;5(1) 57-67 Epub 2005 Sep 26. [PubMed]
  • Bonnet, S., E.D. Michelakis, C.J. Porter, M.A. Andrande-Navarro, B. Thebaud, S.Bonnet, A. Haromy, G.Harry, R. Moudgil, M.S. McMurtry, E.K. Weir, and S.L. Archer. 2006. "An abnormal mitochondrial-HIF-1alpha-Kv channel pathway disrupts oxygen-sensing and triggers pulmonary arterial hypertension (PAH) in fawn-hooded rats: similarities to human PAH." Circulation. In press.
  • Muro, E.M., C. Perex-Iratxeta, and M.A. Andrande-Navarro. 2006. "Amplification of the Gene Ontology annotation of Affymetrix probe sets." BMC Bioinformatics. 7, 159. [PubMed]
  • Palidwor, G., E.G. Reynaud, and M.A. Andrade-Navarro. 2006. "Taxanomic colouring of phylogenetic trees of protein sequences." BMC Bioinformatics. 7, 79. [PubMed]

  • Baldwin, R.M., Lalond, M.G., Parolin, D.A.E., Krzyzanowski, P.M., Andrade, M.A., and Lorimer, I.A.J. 2006. "Protection of glioblastoma cells from cisplain cytotoxicity via protein kinase Cι - mediated attenuation of p38 MAP kinase signaling." Oncogene 25(20): 2909-2919.

     

 2005

  • Fernando, P.S., Deng, W., De Repentigny, Y., Kothary, R., Kelly, J.F., and Megeney, L.A. (2005). “Active kinase proteome screening reveals novel signal complexity in cardiomyopathy.”  Mol. Cell. Proteomics4, 673-682
  • Kendal WS, Suomela BP. "Large-scale genomic correlations in Arabidopsis thaliana relate to chromosomal structure." BMC Genomics. 2005 Jun 2;6(1):82 [PubMed]
  • Korbel, J.O., T. Doerks, L.J. Jensen, C. Perez-Iratxeta, S. Kaczanowski, S.D. Hooper, M.A. Andrade and P. Bork. 2005. "Systematic association of genes to phenotypes by genome and literature mining." PLoS Biology 3(5):e134. [PubMed]

  • Perez-Iratxeta, C. and M.A. Andrade. 2005. "Inconsistencies over time in 5% of NetAffx probe-to-gene annotations." BMC Bioinformatics. 6, 183 [PubMed]

  • Perez-Iratxeta, C., M. Wjst, P. Bork and M.A. Andrade. 2005. G2D: "A Tool for Mining Genes Associated to Disease." BMC Genetics. 6, 45 [PubMed]

  • Perez-Iratxeta, C., G. Palidwor, C.J. Porter, N.A. Sanche, M.R. Huska, B.P. Suomela, E.M. Muro, P.M. Krzyzanowski, E. Hughes, P.A. Campbell, M.A. Rudnicki and M.A. Andrade. 2005. "Study of stem cell function using microarray experiments." FEBS Letters. 579, 1795-180 [PubMed]
  • Reynaud, E.G., M.A. Andrade, F. Bonneau, T.B. Ly, M. Knop, K. Scheffzek and R. Pepperkok. "The human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalisation." BMC Biology. 21, 3. [PubMed]
  • Savchenko, A., N. Krogan, J.R. Cort, E. Evdokimova, J.M. Lew, A.A. Yee, L. Sánchez-Pulido, M.A. Andrade, A. Bochkarev, J.D. Watson, M.A. Kennedy, J. Greenblatt, T. Hughes, C.H. Arrowsmith, J.M. Rommens and A.M. Edwards. 2005. "The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism." Journal of Biological Chemistry. 280:19213-19220 [PubMed]

  • Suomela, B.P. and M.A. Andrade. 2005. "Ranking the whole MEDLINE database according to a large training set using text indexing." BMC Bioinformatics. 6, 75 [PubMed]

  • Xia, X. and G. Palidwor. 2005. "Genomic Adaptation to Acidic Environment: Evidence from Helicobacter pylori." American Naturalist 166(6) [PubMed]
  • Scime, A., Grenier, G., Huh, M.S., Gillespie, M.A., Bevilacqua, L., Harper, M.E., and Rudnicki, M.A. 2005. "Rb and p107 regulate preadipocyte differentiation into white versus brown fat through repression of PGC-1alpha." Cell Metab 2(5): 283-295.

 

 2004

  • Puente LG, Carriere JF, Kelly JF, Megeney LA, 2004. "Comparatice analysis of phosphoprotein-enriched myocyte proteomes reveals widespread alternations during differentiation." FEBS 574:138-44 [PubMed]
  • Seale P, Holtreman C, Rudnicki MA, 2004. "Muscle satellite cell-specific genes identified by genetic profiling of MyoD-deficient myogeic cell." Dev Biol. Nov 15; 275(2):287-300. [PubMed]
  • Yauk, C.L, Berndt, M.L., William, A., and Douglas, G.R. 2004. "Comprehensive comparison of six microarray technologies." Nucleic Acids Research 32(15): e124

 

 2003

  • Polesskaya A, Seale P, Rudnicki MA. 2003. "Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration." Cell 113:841-852. [PubMed]

 

 2002

  • Hierlihy AM, Seale P, Lobe CG, Rudnicki MA, Megeney LA. 2002. "The post-natal heart contains a  myocardial stem cell population." FEBS 530:239-243. [PubMed]